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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106304649_106323461_F

Intron Information:

Intron Rank:
140610
Intron Class:
major
Intron Phase:
Intron Coordinates:
106304649 - 106323461
Intron Length:
18813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTCC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TCTCACTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.3
39.6
Major BPS
70.2
0.5
1
72.1
33
Major PPT
81
0.7
0.9
77.4
36.9
Minor 5ss
36.7
-1.5
3.5
50.9
45.8
Minor BPS
50.5
0.01
1.8
64.61
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025777
106302832 - 106323826
20995