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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106328578_106328724_R

Intron Information:

Intron Rank:
149915
Intron Class:
major
Intron Phase:
Intron Coordinates:
106328578 - 106328724
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
ACCCTATGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTTCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
63.6
0.31
1
58.1
36.8
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
71.8
0.68
1.6
81.19
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044202
106327794 - 106329902
2109