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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106767429_106799405_R

Intron Information:

Intron Rank:
132408
Intron Class:
major
Intron Phase:
Intron Coordinates:
106767429 - 106799405
Intron Length:
31977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGCCTGAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.2
0.52
1
69.4
40.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
61.7
0.36
1.9
76.11
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018498
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028911
106765382 - 106799678
34297