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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106981346_106986883_R

Intron Information:

Intron Rank:
153580
Intron Class:
major
Intron Phase:
Intron Coordinates:
106981346 - 106986883
Intron Length:
5538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
AATTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGCATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
68.6
37.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.4
0.75
0.8
77.5
35.7
Minor 5ss
39.8
-1.1
2.8
46.1
44.4
Minor BPS
47.7
-0
2.1
69.85
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037548
106980891 - 106987560
6670