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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106987038_106987172_R

Intron Information:

Intron Rank:
153582
Intron Class:
major
Intron Phase:
Intron Coordinates:
106987038 - 106987172
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
69.9
0.62
1.4
75.87
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043220
106986833 - 106987248
416