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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106987038_106987472_R

Intron Information:

Intron Rank:
153581
Intron Class:
major
Intron Phase:
Intron Coordinates:
106987038 - 106987472
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
69.9
0.62
1.4
75.87
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037548
106980891 - 106987560
6670
ENSAPLT00000047017
106986287 - 106987560
1274