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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10701301_10701400_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
10701301 - 10701400
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATACTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
41.4
-1
3
54.6
45
Minor BPS
73.7
0.82
1.4
84.69
35.3

Associated Gene:

Gene:
GNAI1
Ensembl Gene ID:
ENSAPLG00000004840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004979
10701161 - 10735095
33935