Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107013456_107022213_R

Intron Information:

Intron Rank:

145181

Intron Class:

major

Intron Phase:

Intron Coordinates:

107013456 - 107022213

Intron Length:

8758

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGCTAC

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTGCTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

TGTCTCAGAGCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

69.3

38.5

Major BPS

71.4

0.53

1.2

63.4

Major PPT

65.1

0.34

1.1

67.8

Minor 5ss

43.7

-0.7

2.9

50.6

46.1

Minor BPS

44.9

-0.3

1.9

59.77

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025542

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018449

107013115 - 107070916

57802