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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107018088_107040336_R

Intron Information:

Intron Rank:
145077
Intron Class:
major
Intron Phase:
Intron Coordinates:
107018088 - 107040336
Intron Length:
22249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75
0.56
1.1
76.3
36.8
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025463
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046485
107017601 - 107041182
23582