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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107022296_107070216_R

Intron Information:

Intron Rank:
145182
Intron Class:
major
Intron Phase:
Intron Coordinates:
107022296 - 107070216
Intron Length:
47921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
CCTGCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.3
0.57
0.9
65.3
40.2
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
63.5
0.29
1.6
66.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018449
107013115 - 107070916
57802