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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10702680_10703974_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10702680 - 10703974
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCCAAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTTTTCCAAATT
Flanking Amino Acid:
DLVLAEDEEMNRMHESMKLF
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
86.6
26
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
73.7
0.53
0.9
66
38.4
Minor 5ss
26.8
-2.7
3.6
35.1
34.5
Minor BPS
53.3
0.18
2
76.83
40

Associated Gene:

Gene:
GNAI1
Ensembl Gene ID:
ENSAPLG00000004840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004979
10701161 - 10735095
33935