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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10704105_10708964_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10704105 - 10708964
Intron Length:
4860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTCTGTTTTACA
Flanking Amino Acid:
THFTFKDLHFKMFDVGGQRS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
54.2
0.13
2.1
70.65
41.9

Associated Gene:

Gene:
GNAI1
Ensembl Gene ID:
ENSAPLG00000004840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004979
10701161 - 10735095
33935