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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107066545_107070216_R

Intron Information:

Intron Rank:
145183
Intron Class:
major
Intron Phase:
Intron Coordinates:
107066545 - 107070216
Intron Length:
3672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
ATGCTTTAAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATGCTTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
62.9
0.29
1
60.2
40
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
65.7
0.57
1.7
80.6
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027197
107066500 - 107070267
3768