Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1071383_1072027_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1071383 - 1072027

Intron Length:

645

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GTTTCCTTTACA

Flanking Amino Acid:

RYAAVRTLNKVAMKHPSAVT

Intron Amino Acid Position:

314

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

77.7

30.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

86.4

0.82

0.8

80.2

31.9

Minor 5ss

31.6

-2.1

3.2

41.8

38.8

Minor BPS

77.7

0.87

1.5

84.68

34.6

Associated Gene:

Gene:

COPG2

Ensembl Gene ID:

ENSAPLG00000007961

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008331

1061986 - 1078387

16402

ENSAPLT00000023829

1061986 - 1222013

160028