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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10714390_10714471_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10714390 - 10714471
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTACTTGAATA
Flanking Amino Acid:
SGKSTIVKQMKIIHEAGYSE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.6
0.67
0.8
77.5
30
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
67.5
0.55
1.4
76.99
33.8

Associated Gene:

Gene:
GNAI1
Ensembl Gene ID:
ENSAPLG00000004840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004979
10701161 - 10735095
33935