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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10714515_10734955_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10714515 - 10734955
Intron Length:
20441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATTTTCTCACAT
Flanking Amino Acid:
AAREVKLLLLGAGESGKSTI
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
52.1
0.15
1.9
75.64
40.8

Associated Gene:

Gene:
GNAI1
Ensembl Gene ID:
ENSAPLG00000004840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004979
10701161 - 10735095
33935