About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107150447_107154870_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
107150447 - 107154870
Intron Length:
4424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATTTTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTGTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TCACCCAGAATT
Flanking Amino Acid:
SSTTSLLLEVLIAICLEIGS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.1
60.4
33.9
Major BPS
60.3
0.26
1
65.5
28
Major PPT
82.9
0.74
0.7
81.5
30.5
Minor 5ss
48.2
-0.2
2.5
63.1
42.9
Minor BPS
49.9
0.07
1.7
68.6
41.8

Associated Gene:

Gene:
N6AMT1
Ensembl Gene ID:
ENSAPLG00000003868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003971
107150340 - 107158160
7821