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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107154958_107155586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107154958 - 107155586
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATTTTTATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
ASIIGSSALYLCTDINPMAA
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
1.1
80.9
35.1
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
N6AMT1
Ensembl Gene ID:
ENSAPLG00000003868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003971
107150340 - 107158160
7821