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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107157354_107158050_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107157354 - 107158050
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGTGCTTTAAAC
Flanking Amino Acid:
YLVTIKENNPDEILETMKKH
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
74.7
0.56
0.9
66.9
38.1
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
65.7
0.47
1.5
72.23
38.8

Associated Gene:

Gene:
N6AMT1
Ensembl Gene ID:
ENSAPLG00000003868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003971
107150340 - 107158160
7821