About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107162367_107162966_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107162367 - 107162966
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTAATAACT
Flanking Amino Acid:
LQLSTYLTHQNGSIMEGLSL
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
74
36.7
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
55.9
0.26
1.9
77.59
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033647
107161400 - 107164727
3328
ENSAPLT00000032600
107161400 - 107167498
6099