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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107165330_107166283_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
107165330 - 107166283
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TGTCTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTGAGTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1
74.3
35.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
81.7
0.71
0.8
77.5
31.2
Minor 5ss
44.9
-0.5
2.8
65.4
40.1
Minor BPS
46.1
-0.3
2.5
68.2
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032600
107161400 - 107167498
6099