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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107166359_107167250_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
107166359 - 107167250
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
78.8
0.65
0.8
74
36.6
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032600
107161400 - 107167498
6099