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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107181820_107182423_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107181820 - 107182423
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTGTTAAAT
Flanking Amino Acid:
RKVILDDLTKMDLKWIIFLQ
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.3
0.82
0.8
77.7
36.7
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
58.1
0.33
2.1
82.38
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004050
107181745 - 107191647
9903