About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107183213_107183577_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
107183213 - 107183577
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
QIHQMLINDQLIPIIDAVLQ
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
76.3
38.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.3
0.73
0.8
77.5
31.2
Minor 5ss
55.2
0.18
2.5
75.2
40.7
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004050
107181745 - 107191647
9903