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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107185007_107186095_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107185007 - 107186095
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCATTTAATT
Flanking Amino Acid:
AVLYVIATVEDCWSHVNAKK
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
64.9
0.55
1.5
78.07
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004050
107181745 - 107191647
9903