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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107187520_107188151_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107187520 - 107188151
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATATATTT
Flanking Amino Acid:
LAFCKDEILNVLQDHLLKET
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.7
73.9
31.2
Minor 5ss
42
-0.9
2.8
53.8
43.6
Minor BPS
47.4
-0.1
2
70.68
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004050
107181745 - 107191647
9903