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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107192612_107193325_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107192612 - 107193325
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATGGATA
Flanking Amino Acid:
LQSNCDEFWSRVRRLTWKRI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.3
0.68
0.9
76.9
37.4
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
49
-0
1.7
64.47
35.4

Associated Gene:

Gene:
RWDD2B
Ensembl Gene ID:
ENSAPLG00000004842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023779
107192374 - 107199569
7196
ENSAPLT00000004981
107192374 - 107197199
4826
ENSAPLT00000039622
107192374 - 107199106
6733