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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107194406_107194520_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
107194406 - 107194520
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCGTAA
5'SS Class:
weak_major
3'SS Sequence:
TCATCGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTCCAACT
Flanking Amino Acid:
VKPEVPGASMAEFSMVCALP
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.27
1.2
57.2
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.6
0.58
0.9
73.2
37
Minor 5ss
47.8
-0.2
2.9
60.6
46.3
Minor BPS
58
0.33
1.9
82.83
37.9

Associated Gene:

Gene:
RWDD2B
Ensembl Gene ID:
ENSAPLG00000004842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039622
107192374 - 107199106
6733
ENSAPLT00000023779
107192374 - 107199569
7196
ENSAPLT00000004981
107192374 - 107197199
4826