Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107200627_107203018_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107200627 - 107203018

Intron Length:

2392

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TGGGCTGATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

GTGGGCTGATAC

Flanking Amino Acid:

LVLSLDNWSVWCYICDNEVP

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

76.6

34.9

Major BPS

77.9

0.69

0.8

75.9

Major PPT

61.5

0.26

1.1

53.7

45.1

Minor 5ss

38.5

-1.3

2.9

46.1

43.6

Minor BPS

38.5

-0.8

2.1

45.02

Associated Gene:

Gene:

USP16

Ensembl Gene ID:

ENSAPLG00000004850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005009

107197896 - 107215372

17477