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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107205860_107206459_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107205860 - 107206459
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATAAG
5'SS Class:
major
3'SS Sequence:
TTGTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TTTTGTTTAAAA
Flanking Amino Acid:
VKIESPELSMEPQLIKLDPP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1
65.7
39.6
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
70.8
0.47
1.1
67.6
41.7
Minor 5ss
40.7
-1
2.7
46.9
44
Minor BPS
66.9
0.53
1.8
80.33
35.6

Associated Gene:

Gene:
USP16
Ensembl Gene ID:
ENSAPLG00000004850
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005009
107197896 - 107215372
17477