Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107208949_107209819_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107208949 - 107209819

Intron Length:

871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATAC

5'SS Class:

strong_major

3'SS Sequence:

TGTCAATTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

ATATTACTAACT

Flanking Amino Acid:

NEEELKTKIKEYEKKKGMKS

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

74.5

29.8

Major BPS

76.8

0.67

0.9

75.9

Major PPT

0.63

0.9

73.9

40.3

Minor 5ss

37.6

-1.4

3.2

49.9

46.6

Minor BPS

0.24

1.9

77.35

38.3

Associated Gene:

Gene:

USP16

Ensembl Gene ID:

ENSAPLG00000004850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005009

107197896 - 107215372

17477