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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107212803_107213521_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107212803 - 107213521
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTCTTTAGAT
Flanking Amino Acid:
QRHCGPKNMKSEKKYVYTNA
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
69.4
30.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.4
0.8
0.8
79.9
32.3
Minor 5ss
45.1
-0.5
2.8
55.6
43.3
Minor BPS
66.8
0.61
1.6
83.8
36.8

Associated Gene:

Gene:
USP16
Ensembl Gene ID:
ENSAPLG00000004850
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005009
107197896 - 107215372
17477