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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107214680_107214979_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107214680 - 107214979
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGTACCATAACT
Flanking Amino Acid:
LAPFCTVKCKNVAEGSTKVL
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
85.1
0.79
0.8
79.5
32.4
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
70.6
0.72
1.7
87.23
37.4

Associated Gene:

Gene:
USP16
Ensembl Gene ID:
ENSAPLG00000004850
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005009
107197896 - 107215372
17477