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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107218586_107219756_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107218586 - 107219756
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTAACCTTATCT
Flanking Amino Acid:
AAVTVLRVDQIIMAKPAGGP
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
67.9
0.4
1
64.5
36.9
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
64.1
0.52
1.7
77.73
44.2

Associated Gene:

Gene:
CCT8
Ensembl Gene ID:
ENSAPLG00000004961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005169
107218508 - 107228171
9664