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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107222186_107222265_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107222186 - 107222265
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGAGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CGTCTCTTGACC
Flanking Amino Acid:
TVGATALPRLTPPTLEEMGH
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
67.8
42.7
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
40.2
-1.1
3.2
54.1
45.1
Minor BPS
64.4
0.43
1.3
67.58
38.1

Associated Gene:

Gene:
CCT8
Ensembl Gene ID:
ENSAPLG00000004961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005169
107218508 - 107228171
9664