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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107222333_107223016_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107222333 - 107223016
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATGAATA
Flanking Amino Acid:
YANKYNLMLVRLNSKWDLRR
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.5
0.69
1
82.9
32.5
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
51.8
0.05
1.7
61.39
38.3

Associated Gene:

Gene:
CCT8
Ensembl Gene ID:
ENSAPLG00000004961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005169
107218508 - 107228171
9664