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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107223803_107224117_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107223803 - 107224117
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ATGACTTTCACC
Flanking Amino Acid:
VDNIRVCKIVGAGISASSVL
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
85.7
0.8
0.9
81.2
36.5
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
54.9
0.13
1.8
65.11
40.8

Associated Gene:

Gene:
CCT8
Ensembl Gene ID:
ENSAPLG00000004961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005169
107218508 - 107228171
9664