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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107224180_107224900_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107224180 - 107224900
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
FLSKLIAQACVSILPESGHF
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
72.8
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67
0.38
0.9
62.4
32.3
Minor 5ss
32.5
-2
3.2
40.9
45.4
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
CCT8
Ensembl Gene ID:
ENSAPLG00000004961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005169
107218508 - 107228171
9664