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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107225965_107226511_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107225965 - 107226511
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTGCCTAATA
Flanking Amino Acid:
QTTRTAYGPNGMNKMVINHL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.3
0.68
0.7
77.8
24
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
54.9
0.15
2.1
71.63
41

Associated Gene:

Gene:
CCT8
Ensembl Gene ID:
ENSAPLG00000004961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005169
107218508 - 107228171
9664