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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107294791_107294882_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107294791 - 107294882
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGCA
5'SS Class:
major
3'SS Sequence:
TCTTTTATTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
MGSAALLHKGNDKP
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
59.7
39.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78
0.63
1
79.8
31.1
Minor 5ss
34.9
-1.7
3.6
48.1
47.6
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
MAP3K7CL
Ensembl Gene ID:
ENSAPLG00000004718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004864
107294586 - 107324319
29734