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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107297599_107297852_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107297599 - 107297852
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGCTCTGTAATA
Flanking Amino Acid:
MAGSKQLEQTSKSIGS
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.2
0.7
0.9
78.2
39.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
55.4
0.17
2
67.25
40.1

Associated Gene:

Gene:
MAP3K7CL
Ensembl Gene ID:
ENSAPLG00000004718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042979
107294883 - 107324417
29535
ENSAPLT00000021958
107297174 - 107324417
27244
ENSAPLT00000004861
107295316 - 107324319
29004