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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107367346_107371176_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107367346 - 107371176
Intron Length:
3831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
ADLIITLPEEVTLKGFSPLL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.1
0.41
1
65.1
39.4
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
BACH1
Ensembl Gene ID:
ENSAPLG00000004662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004786
107356441 - 107380044
23604
ENSAPLT00000032032
107356441 - 107379663
23223
ENSAPLT00000021142
107356441 - 107381327
24887
ENSAPLT00000017420
107356441 - 107380044
23604