About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107372569_107374157_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107372569 - 107374157
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TCACCTTTGACT
Flanking Amino Acid:
SCSAREQECEVKLPFNAQRI
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
75.6
0.58
0.9
67.1
38.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
68.5
0.66
1.2
77.23
39.4

Associated Gene:

Gene:
BACH1
Ensembl Gene ID:
ENSAPLG00000004662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032032
107356441 - 107379663
23223
ENSAPLT00000021142
107356441 - 107381327
24887
ENSAPLT00000017420
107356441 - 107380044
23604
ENSAPLT00000004786
107356441 - 107380044
23604