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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107379257_107379358_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107379257 - 107379358
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
TATTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
ACTTGCGAAATA
Flanking Amino Acid:
KERNHILSTLDCPLSFLFPE
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
63.9
38
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
83
0.74
0.7
81.4
30.2
Minor 5ss
25.4
-2.8
2.8
22
37
Minor BPS
42.4
-0.5
2.5
56.61
43.6

Associated Gene:

Gene:
BACH1
Ensembl Gene ID:
ENSAPLG00000004662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004786
107356441 - 107380044
23604
ENSAPLT00000032032
107356441 - 107379663
23223
ENSAPLT00000017420
107356441 - 107380044
23604