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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107426551_107434706_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
107426551 - 107434706
Intron Length:
8156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CATGTTCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTAATGCAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
69.4
36.7
Major BPS
100
1.24
0.5
100
0
Major PPT
67.8
0.4
1
59.7
41.4
Minor 5ss
35.1
-1.7
2.7
41.9
44.7
Minor BPS
41.9
-0.5
2.2
61.38
43

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047234
107426080 - 107594296
168217
ENSAPLT00000022994
107426080 - 107594296
168217