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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107437553_107442033_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107437553 - 107442033
Intron Length:
4481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTGCTCTTACCT
Flanking Amino Acid:
SKGYGVGTPIGSPYRDKITI
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
67.2
39.4
Major BPS
69.2
0.48
1
61
37.1
Major PPT
83.6
0.76
0.8
77.4
31
Minor 5ss
38.8
-1.3
3.1
51.6
45.1
Minor BPS
65.1
0.55
1.6
80.77
41.2

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022994
107426080 - 107594296
168217
ENSAPLT00000020678
107426080 - 107594296
168217
ENSAPLT00000047234
107426080 - 107594296
168217
ENSAPLT00000004177
107426080 - 107594296
168217
ENSAPLT00000045773
107426080 - 107594296
168217
ENSAPLT00000029805
107426080 - 107594296
168217