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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107442260_107446996_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107442260 - 107446996
Intron Length:
4737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
ATGATTCTACGT
Flanking Amino Acid:
RDGSTMTFFKKSKISTYEKM
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
78.8
0.65
0.7
77.8
24.1
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
39.7
-0.7
2
54.59
41.6

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022994
107426080 - 107594296
168217
ENSAPLT00000020678
107426080 - 107594296
168217
ENSAPLT00000047234
107426080 - 107594296
168217
ENSAPLT00000004177
107426080 - 107594296
168217
ENSAPLT00000045773
107426080 - 107594296
168217
ENSAPLT00000029805
107426080 - 107594296
168217