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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107451453_107456935_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107451453 - 107456935
Intron Length:
5483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTAACTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTCTGTTAACT
Flanking Amino Acid:
GVSCVLFVIARFTPYEWYNP
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
68
0.41
1
61.3
39.8
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
67.4
0.63
2
88.99
35.6

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029805
107426080 - 107594296
168217
ENSAPLT00000022994
107426080 - 107594296
168217
ENSAPLT00000020678
107426080 - 107594296
168217
ENSAPLT00000047234
107426080 - 107594296
168217
ENSAPLT00000004177
107426080 - 107594296
168217
ENSAPLT00000045773
107426080 - 107594296
168217