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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107457160_107457736_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107457160 - 107457736
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATTG
5'SS Class:
major
3'SS Sequence:
TTTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TGACAAAGAATG
Flanking Amino Acid:
NGMVKELIDHKADLAVAPLT
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.5
36.6
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
44
-0.7
3.1
61
43.6
Minor BPS
36.8
-1.1
1.8
39.59
36.4

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022994
107426080 - 107594296
168217
ENSAPLT00000020678
107426080 - 107594296
168217
ENSAPLT00000047234
107426080 - 107594296
168217
ENSAPLT00000004177
107426080 - 107594296
168217
ENSAPLT00000045773
107426080 - 107594296
168217
ENSAPLT00000029805
107426080 - 107594296
168217