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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107478739_107482147_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107478739 - 107482147
Intron Length:
3409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
ETGLLDGMMTTEAALMYDAV
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.1
0.61
0.8
72.5
31.2
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047234
107426080 - 107594296
168217
ENSAPLT00000045773
107426080 - 107594296
168217
ENSAPLT00000022994
107426080 - 107594296
168217
ENSAPLT00000004177
107426080 - 107594296
168217